Course Schedule

2026 Course Schedule

The 2026 Computational Genomics Course will be held June 22-26

Please familiarize yourself with the applications we will be using in this course on the Course Preparation & FAQs page.

Classes are held from 9:00 AM to 4:30 PM (central time). 15-minute breaks will be given daily at 10:30 AM and 2:45 PM between the lectures and computer labs.

Live content

  9:00 – 10:30 AM 10:45 AM – 12:15 PM 12:15 PM 1:15 – 2:45 PM

3:00 – 4:30 PM

6/22
MON

(9:00 – 9:15 AM)
Welcome & Intro

(9:15 – 10:30 AM)
Genome Assembly

Chris Fields
(lecture)

(10:45 – 11:00 AM)
Lab Introduction

(11:00 – 12:15 PM)
Genome Assembly Lab

(self-paced)

Lunch Polymorphisms & Association Tests
Tiago Bresolin
(lecture)
Polymorphisms & Association Tests Lab
Edgar Caballero Vargas
(self-paced)
6/23
TUE
Clinical Variant Interpretation
Joe Farris
(lecture
Clinical Variant Interpretation Lab

(synchronous
Lunch Bulk RNA-Sequencing Analyses
Jessica Holmes
(lecture) Part 1 | Part 2
Bulk RNA-Sequencing Analyses Lab

(self-paced
6/24
WED

RNA-Seq in Hereditary Disease Diagnosis
Collin Osborne
(lecture & synchronous lab)
Outlier Expression
Fusion
Outlier Splicing

Long Read Sequencing
Jagadheshwar Balan, Jesse Walsh
(lecture & synchronous lab)
Lunch Basic Single Cell & Spatial Transcriptomics
Jenny Drnevich
(lecture) Part 1 | Part 2
Basic Single Cell & Spatial Transcriptomics Lab

(self-paced)
6/25
THU
Clinical Single Cell & Spatial Transcriptomics
Yan Asmann
(lecture)
Clinical Single Cell & Spatial Transcriptomics Lab
Nicholas Dove, Yi Liu
(synchronous)
Lunch Regulatory Genomics
Charles Blatti

(lecture)

Regulatory Genomics Lab
(self-paced)
Check your understanding

6/26
FRI
Modeling Biology with AI
Jake Matras, Josh Meehl, Bridget Toomey
(lecture)
Modeling Biology with AI Lab
Eman Abdelatif 
(self-paced)
Lunch

Clinical AI: Past, Present, Future 
Irbaz Riaz
(lecture)

Fundamentals of Large Language Models and Clinical reasoning capabilities 
Ben Zhou
(lecture)

Clinical Applications of AI Lab
Umair Ayub, Huan He, Muhammad Ali Khan
(synchronous)
part 1 | part 2
lab notebook

 

On-demand content

Systems Biology
Charles Blatti
slides | lecture
Exploring AI
Priyam Mazumdar
slides | lecture
Microbiome Informatics
Lu Yang, Jun Chen
slides 1 | lecture 1 
slides 2 | lecture 2
Variant Calling
Chris Fields
slides | lecture
Polymorphisms  & Association Tests
Alex Lipka
slides | lecture 1 | lecture 2
Modeling Biology with AI
Matthew Redlon
slides | lecture